MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Staphylococcus aureus
STF.1
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
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Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 123
bases: 2,698,428 bps
CDS: 2,464
rRNA: 9
Repeat region:
tmRNA: 1
tRNA: 60
misc RNA:
Total features: 2,534
Total number of protein coding genes annotated/found:
2,464
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Items 1 - 20
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Molecule ^
PID/GenBank ID *^
Sequences
Size (NA/AA)
Range ^
Gene Product Name
SEQF5004|JADGKH010000052.1
SEQF5004_01687
Genome Viewer
NA
AA
17199/5733
58922-41724
Extracellular matrix-binding protein EbhA
SEQF5004|JADGKH010000052.1
SEQF5004_01688
Genome Viewer
NA
AA
14475/4825
73595-59121
Extracellular matrix-binding protein ebh
SEQF5004|JADGKH010000058.1
SEQF5004_01925
Genome Viewer
NA
AA
7485/2495
103002-95518
hypothetical protein
SEQF5004|JADGKH010000043.1
SEQF5004_01330
Genome Viewer
NA
AA
7176/2392
25307-18132
D-alanine--D-alanyl carrier protein ligase
SEQF5004|JADGKH010000042.1
SEQF5004_00794
Genome Viewer
NA
AA
6594/2198
188272-181679
hypothetical protein
SEQF5004|JADGKH010000026.1
SEQF5004_01572
Genome Viewer
NA
AA
6330/2110
16063-9734
hypothetical protein
SEQF5004|JADGKH010000102.1
SEQF5004_00394
Genome Viewer
NA
AA
4500/1500
15558-11059
Glutamate synthase [NADPH] large chain
SEQF5004|JADGKH010000024.1
SEQF5004_01584
Genome Viewer
NA
AA
4440/1480
5561-10000
Type VII secretion system protein EssC
SEQF5004|JADGKH010000034.1
SEQF5004_01195
Genome Viewer
NA
AA
4317/1439
12842-17158
DNA polymerase III PolC-type
SEQF5004|JADGKH010000045.1
SEQF5004_00340
Genome Viewer
NA
AA
4218/1406
11201-6984
Serine-aspartate repeat-containing protein D
SEQF5004|JADGKH010000028.1
SEQF5004_01774
Genome Viewer
NA
AA
3825/1275
7780-3956
hypothetical protein
SEQF5004|JADGKH010000082.1
SEQF5004_01515
Genome Viewer
NA
AA
3762/1254
2702-6463
Bifunctional autolysin
SEQF5004|JADGKH010000022.1
SEQF5004_02062
Genome Viewer
NA
AA
3690/1230
41970-38281
Respiratory nitrate reductase 1 alpha chain
SEQF5004|JADGKH010000029.1
SEQF5004_00288
Genome Viewer
NA
AA
3654/1218
16644-12991
ATP-dependent helicase/nuclease subunit A
SEQF5004|JADGKH010000045.1
SEQF5004_00359
Genome Viewer
NA
AA
3624/1208
36370-32747
DNA-directed RNA polymerase subunit beta'
SEQF5004|JADGKH010000088.1
SEQF5004_01049
Genome Viewer
NA
AA
3567/1189
29087-32653
Chromosome partition protein Smc
SEQF5004|JADGKH010000045.1
SEQF5004_00360
Genome Viewer
NA
AA
3552/1184
40058-36507
DNA-directed RNA polymerase subunit beta
SEQF5004|JADGKH010000059.1
SEQF5004_01159
Genome Viewer
NA
AA
3507/1169
19384-15878
Transcription-repair-coupling factor
SEQF5004|JADGKH010000029.1
SEQF5004_00289
Genome Viewer
NA
AA
3477/1159
20121-16645
ATP-dependent helicase/deoxyribonuclease subunit B
SEQF5004|JADGKH010000076.1
SEQF5004_00097
Genome Viewer
NA
AA
3465/1155
19277-15813
hypothetical protein
Items 1 - 20
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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